Depends on what your definition of 100% in-house is. AFAIK, only Seiko is completely in-house, including screws and lubricant. I wouldn't call ETA an in-house manufacturer because they don't make complete watches. They're the movement makers for Swatch Group.
However, AP would be part of the discussion since they now own the rights and equipment to make the caliber 2003. JLC used to make it as the 903, then sold it to both AP (rebadged as the 2003) and VC (rebadged as the 1003). When Richemont bought JLC, they had to buy AP's 40-ish percent of JLC so AP got that caliber in the deal.
EDIT: IWC still makes a few in-house calibers using their Pellaton winding system. They do outsource for their simple calibers though.
If you want to talk REALLY high end, brands like R.W. Smith, DuFour, and other super-elite manufacturers would come into the mix..
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